Hi everyone,
Sorry, been traveling on my job for two days.
The bose system was a christmas present from my wife two year ago and I can't complain as I have always liked the system. Then again, it is my first surround system so I don't really have anything to compare it with. Regardless, it's a present from the wife and it definitely is not going in the trash.
Since I posted this, I connected my main B speaker outputs from the Yamaha to the L and R inputs on the Sub and that seemed to make a dramatic difference in the bass. I'm not sure if I'm getting additional bass signals (I think I am as I can tell a difference now if changing the level of the 40-120 knob on the sum) as the yamaha cuts of anything above 90 or if I am just getting twice the signal and it sounds louder.
I did not quite understand the Y cable connection as the only connection on the back of the sub are the LR IN, LR out (Banana connectors or twist down) and the LFE RCA connector and some RCA connector right beside the LFE that is red and labeled R (I'm assuming it is RIGHT).
Thanks for the replies!