TLDR: the output level of the subwoofer RCA jack is very low. Without the extra gain of my WA-2s, integration might have been difficult.
After initially setting the Cinema 1200 up with the included wireless sub, I switched to the subs from my previous system, consisting of 2x Klipsch R112SW, connected via WA-2 wireless subwoofer kits. At first, there was no output at all from my subs. I found that the subs were not powering up in the "auto" mode (the input was too low to trigger them on). After switching the subs to "on" I noticed very low bass output. I had to max the gain knob on the subs to 11 and add max out the soundbar sub volume to get reasonable output. When using the wireless sub, the sub volume was set to 0 and I mostly listened in Night 1 mode to reduce bass. Fortunately, the WA-2 has the ability to apply 12db of gain or attenuation, and that seems to be enough to compensate for the very low output on the sub out jack. I still need to play with levels to adjust Night-0 for normal use and Night-1 for quiet times, aka after wife goes to bed.